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» The Factor Graph Network Model for Biological Systems
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SODA
2001
ACM
79views Algorithms» more  SODA 2001»
13 years 10 months ago
Learning Markov networks: maximum bounded tree-width graphs
Markov networks are a common class of graphical models used in machine learning. Such models use an undirected graph to capture dependency information among random variables in a ...
David R. Karger, Nathan Srebro
RECOMB
2006
Springer
14 years 9 months ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
SIGSOFT
2009
ACM
14 years 9 months ago
Improving bug triage with bug tossing graphs
A bug report is typically assigned to a single developer who is then responsible for fixing the bug. In Mozilla and Eclipse, between 37%-44% of bug reports are "tossed" ...
Gaeul Jeong, Sunghun Kim, Thomas Zimmermann
BIOCOMP
2008
13 years 10 months ago
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
Background: Inferring a gene regulatory network (GRN) from high throughput biological data is often an under-determined problem and is a challenging task due to the following reas...
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
BIBE
2008
IEEE
111views Bioinformatics» more  BIBE 2008»
13 years 10 months ago
Structure learning for biomolecular pathways containing cycles
Bayesian network structure learning is a useful tool for elucidation of regulatory structures of biomolecular pathways. The approach however is limited by its acyclicity constraint...
S. Itani, Karen Sachs, Garry P. Nolan, M. A. Dahle...