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NAR
2011
214views Computer Vision» more  NAR 2011»
12 years 11 months ago
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
MicroRNAs (miRNAs) represent an important class of small non-coding RNAs (sRNAs) that regulate gene expression by targeting messenger RNAs. However, assigning miRNAs to their regu...
Jian-Hua Yang, Jun-Hao Li, Peng Shao, Hui Zhou, Yu...
JBI
2006
107views Bioinformatics» more  JBI 2006»
13 years 8 months ago
Knowledge guided analysis of microarray data
To microarray expression data analysis, it is well accepted that biological knowledge-guided clustering techniques show more advantages than pure mathematical techniques. In this ...
Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Le...
BMCBI
2005
153views more  BMCBI 2005»
13 years 8 months ago
Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text
Background: The BioCreative text mining evaluation investigated the application of text mining methods to the task of automatically extracting information from text in biomedical ...
Soumya Ray, Mark Craven
ICDE
2007
IEEE
121views Database» more  ICDE 2007»
14 years 15 days ago
Evaluating Different Ranking Functions for Context-Based Literature Search
Context-based literature digital library search is a new search paradigm that creates an effective ranking of query outputs by controlling query output topic diversity. We define ...
Nattakarn Ratprasartporn, Sulieman Bani-Ahmad, Ali...
BMCBI
2008
141views more  BMCBI 2008»
13 years 8 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...