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BMCBI
2005
115views more  BMCBI 2005»
13 years 7 months ago
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays
Background: Enhancements in sequencing technology have recently yielded assemblies of large genomes including rat, mouse, human, fruit fly, and zebrafish. The availability of larg...
Eric C. Rouchka, Abdelnaby Khalyfa, Nigel G. F. Co...
CCGRID
2004
IEEE
13 years 11 months ago
Remote partial file access using compact pattern descriptions
We present a method for the efficient access to parts of remote files. The efficiency is achieved by using a file format independent compact pattern description, that allows to re...
Thorsten Schütt, André Merzky, Andrei ...
ACL
2008
13 years 8 months ago
Pairwise Document Similarity in Large Collections with MapReduce
This paper presents a MapReduce algorithm for computing pairwise document similarity in large document collections. MapReduce is an attractive framework because it allows us to de...
Tamer Elsayed, Jimmy J. Lin, Douglas W. Oard
ICDE
2007
IEEE
190views Database» more  ICDE 2007»
13 years 11 months ago
CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences
Suffix tree is an important data structure for indexing a long sequence (like a genome sequence) or a concatenation of sequences. It finds many applications in practice, especiall...
Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong
ICDE
2006
IEEE
201views Database» more  ICDE 2006»
14 years 8 months ago
Counting at Large: Efficient Cardinality Estimation in Internet-Scale Data Networks
Counting in general, and estimating the cardinality of (multi-) sets in particular, is highly desirable for a large variety of applications, representing a foundational block for ...
Nikos Ntarmos, Peter Triantafillou, Gerhard Weikum