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SAC
2009
ACM
14 years 4 months ago
A new protein motif extraction framework based on constrained co-clustering
Signal finding (pattern discovery) in biological sequences is a fundamental problem in both computer science and molecular biology. Many approaches have been proposed for extract...
Francesca Cordero, Alessia Visconti, Marco Botta
SC
2005
ACM
14 years 3 months ago
An Application-Based Performance Characterization of the Columbia Supercluster
Columbia is a 10,240-processor supercluster consisting of 20 Altix nodes with 512 processors each, and currently ranked as one of the fastest computers in the world. In this paper...
Rupak Biswas, M. Jahed Djomehri, Robert Hood, Haoq...
KDD
2009
ACM
191views Data Mining» more  KDD 2009»
14 years 10 months ago
Efficient methods for topic model inference on streaming document collections
Topic models provide a powerful tool for analyzing large text collections by representing high dimensional data in a low dimensional subspace. Fitting a topic model given a set of...
Limin Yao, David M. Mimno, Andrew McCallum
FCCM
2006
IEEE
133views VLSI» more  FCCM 2006»
14 years 4 months ago
A Scalable FPGA-based Multiprocessor
It has been shown that a small number of FPGAs can significantly accelerate certain computing tasks by up to two or three orders of magnitude. However, particularly intensive lar...
Arun Patel, Christopher A. Madill, Manuel Salda&nt...
BMCBI
2008
156views more  BMCBI 2008»
13 years 10 months ago
The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays
Background: Nucleic acid hybridization, a fundamental technique in molecular biology, can be modified into very effective and sensitive methods for detecting particular targets mi...
Shu-Hwa Chen, Chen-Zen Lo, Ming-Chi Tsai, Chao A. ...