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» The Inference Based on Molecular Computing
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JCC
2006
78views more  JCC 2006»
13 years 9 months ago
Software news and updates carma: A molecular dynamics analysis program
: A computer program has been developed to aid the analysis of molecular dynamics trajectories. The program is tuned for macromolecular large-scale problems and supports features s...
Nicholas M. Glykos
JCB
1998
129views more  JCB 1998»
13 years 9 months ago
A Sticker-Based Model for DNA Computation
We introduce a new model of molecular computation that we call the sticker model. Like many previous proposals it makes use of DNA strands as the physical substrate in which infor...
Sam T. Roweis, Erik Winfree, Richard Burgoyne, Nic...
ICCAD
2005
IEEE
93views Hardware» more  ICCAD 2005»
14 years 6 months ago
Eliminating wire crossings for molecular quantum-dot cellular automata implementation
— When exploring computing elements made from technologies other than CMOS, it is imperative to investigate the effects of physical implementation constraints. This paper focuses...
Amitabh Chaudhary, Danny Z. Chen, Kevin Whitton, M...
ISMB
1998
13 years 11 months ago
BioSim: A New Qualitative Simulation Environment for Molecular Biology
Traditionally, biochemical systems are modelled usingkinetics anddifferential equationsin a quantitative simulator. However,for manybiological processes detailed quantitative info...
Karsten R. Heidtke, Steffen Schulze-Kremer
SMA
2009
ACM
137views Solid Modeling» more  SMA 2009»
14 years 4 months ago
Hierarchical molecular interfaces and solvation electrostatics
Electrostatic interactions play a significant role in determining the binding affinity of molecules and drugs. While significant effort has been devoted to the accurate computat...
Chandrajit L. Bajaj, Shun-Chuan Albert Chen, Guoli...