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» The Inference Problem: A Survey
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BMCBI
2007
153views more  BMCBI 2007»
13 years 10 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
ECML
2006
Springer
14 years 1 months ago
Transductive Gaussian Process Regression with Automatic Model Selection
Abstract. In contrast to the standard inductive inference setting of predictive machine learning, in real world learning problems often the test instances are already available at ...
Quoc V. Le, Alexander J. Smola, Thomas Gärtne...
BIRD
2008
Springer
141views Bioinformatics» more  BIRD 2008»
13 years 12 months ago
Nested q-Partial Graphs for Genetic Network Inference from "Small n, Large p" Microarray Data
Abstract. Gaussian graphical models are widely used to tackle the important and challenging problem of inferring genetic regulatory networks from expression data. These models have...
Kevin Kontos, Gianluca Bontempi
WABI
2010
Springer
178views Bioinformatics» more  WABI 2010»
13 years 8 months ago
Haplotype Inference on Pedigrees with Recombinations and Mutations
Abstract. Haplotype Inference (HI) is a computational challenge of crucial importance in a range of genetic studies, such as functional genomics, pharmacogenetics and population ge...
Yuri Pirola, Paola Bonizzoni, Tao Jiang
LION
2009
Springer
115views Optimization» more  LION 2009»
14 years 4 months ago
Flexible Stochastic Local Search for Haplotype Inference
Abstract. Haplotype Inference is a challenging problem in bioinformatics that consists in inferring the basic genetic constitution of diploid organisms on the basis of their genoty...
Luca Di Gaspero, Andrea Roli