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BMCBI
2010
129views more  BMCBI 2010»
13 years 7 months ago
Automatic prediction of catalytic residues by modeling residue structural neighborhood
Background: Prediction of catalytic residues is a major step in characterizing the function of enzymes. In its simpler formulation, the problem can be cast into a binary classific...
Elisa Cilia, Andrea Passerini
BMCBI
2010
167views more  BMCBI 2010»
13 years 7 months ago
BisoGenet: a new tool for gene network building, visualization and analysis
Background: The increasing availability and diversity of omics data in the post-genomic era offers new perspectives in most areas of biomedical research. Graph-based biological ne...
Alexander Martin, Maria Elena Ochagavia, Laya C. R...
CHI
2005
ACM
14 years 8 months ago
Single complex glyphs versus multiple simple glyphs
Designers of information visualization systems have the choice to present information in a single integrated view or in multiple views. In practice, there is a continuum between t...
Beth Yost, Chris North
KDD
2008
ACM
147views Data Mining» more  KDD 2008»
14 years 8 months ago
Extracting shared subspace for multi-label classification
Multi-label problems arise in various domains such as multitopic document categorization and protein function prediction. One natural way to deal with such problems is to construc...
Shuiwang Ji, Lei Tang, Shipeng Yu, Jieping Ye
BMCBI
2006
172views more  BMCBI 2006»
13 years 7 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...