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BMCBI
2005
109views more  BMCBI 2005»
13 years 6 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
JCDL
2010
ACM
184views Education» more  JCDL 2010»
13 years 11 months ago
Evaluating topic models for digital libraries
Topic models could have a huge impact on improving the ways users find and discover content in digital libraries and search interfaces, through their ability to automatically lea...
David Newman, Youn Noh, Edmund M. Talley, Sarvnaz ...
KDD
2005
ACM
170views Data Mining» more  KDD 2005»
14 years 7 months ago
Parallel mining of closed sequential patterns
Discovery of sequential patterns is an essential data mining task with broad applications. Among several variations of sequential patterns, closed sequential pattern is the most u...
Shengnan Cong, Jiawei Han, David A. Padua
BMCBI
2007
147views more  BMCBI 2007»
13 years 6 months ago
Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model
Background: Serial analysis of gene expression (SAGE) is used to obtain quantitative snapshots of the transcriptome. These profiles are count-based and are assumed to follow a Bin...
Scott D. Zuyderduyn
BMCBI
2005
106views more  BMCBI 2005»
13 years 6 months ago
A multistep bioinformatic approach detects putative regulatory elements in gene promoters
Background: Searching for approximate patterns in large promoter sequences frequently produces an exceedingly high numbers of results. Our aim was to exploit biological knowledge ...
Stefania Bortoluzzi, Alessandro Coppe, Andrea Biso...