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RECOMB
2005
Springer
14 years 3 months ago
An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome
For studying gene regulatory and protein signaling networks, we have developed an interactive map for the Pseudomonas aeruginosa genome. We first represent genes, proteins and the...
Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing ...
ICDE
2002
IEEE
181views Database» more  ICDE 2002»
14 years 2 months ago
YFilter: Efficient and Scalable Filtering of XML Documents
Soon, much of the data exchanged over the Internet will be encoded in XML, allowing for sophisticated filtering and content-based routing. We have built a filtering engine called ...
Yanlei Diao, Peter M. Fischer, Michael J. Franklin...
BMCBI
2010
136views more  BMCBI 2010»
13 years 10 months ago
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Background: An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed...
Tamás Nepusz, Rajkumar Sasidharan, Alberto ...
BMCBI
2007
265views more  BMCBI 2007»
13 years 10 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...
VLDB
2002
ACM
114views Database» more  VLDB 2002»
13 years 9 months ago
Tree Pattern Aggregation for Scalable XML Data Dissemination
With the rapid growth of XML-document traffic on the Internet, scalable content-based dissemination of XML documents to a large, dynamic group of consumers has become an important...
Chee Yong Chan, Wenfei Fan, Pascal Felber, Minos N...