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» The Motif Tracking Algorithm
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BMCBI
2004
158views more  BMCBI 2004»
13 years 10 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
RECOMB
2003
Springer
14 years 11 months ago
Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species
In [13] we reported the genome sequences of S. paradoxus, S. mikatae and S. bayanus and compared these three yeast species to their close relative, S. cerevisiae. Genome-wide comp...
Manolis Kamvysselis, Nick Patterson, Bruce Birren,...
SDM
2007
SIAM
145views Data Mining» more  SDM 2007»
14 years 10 days ago
Finding Motifs in a Database of Shapes
The problem of efficiently finding images that are similar to a target image has attracted much attention in the image processing community and is rightly considered an informatio...
Xiaopeng Xi, Eamonn J. Keogh, Li Wei, Agenor Mafra...
BMCBI
2007
105views more  BMCBI 2007»
13 years 11 months ago
Finding regulatory elements and regulatory motifs: a general probabilistic framework
Over the last two decades a large number of algorithms has been developed for regulatory motif finding. Here we show how many of these algorithms, especially those that model bind...
Erik van Nimwegen
ICMLA
2008
14 years 10 days ago
Ensemble Machine Methods for DNA Binding
We introduce three ensemble machine learning methods for analysis of biological DNA binding by transcription factors (TFs). The goal is to identify both TF target genes and their ...
Yue Fan, Mark A. Kon, Charles DeLisi