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» The Motif Tracking Algorithm
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PPSN
2004
Springer
14 years 3 months ago
Searching Transcriptional Modules Using Evolutionary Algorithms
The mechanism of gene regulation has been studied intensely for decades. It is important to identify synergistic transcriptional motifs. Its search space is so large that an effici...
Je-Gun Joung, Sok June Oh, Byoung-Tak Zhang
KDD
2007
ACM
168views Data Mining» more  KDD 2007»
14 years 10 months ago
Detecting time series motifs under uniform scaling
Time series motifs are approximately repeated patterns found within the data. Such motifs have utility for many data mining algorithms, including rule-discovery, novelty-detection...
Dragomir Yankov, Eamonn J. Keogh, Jose Medina, Bil...
WABI
2009
Springer
14 years 4 months ago
MADMX: A Novel Strategy for Maximal Dense Motif Extraction
We develop, analyze and experiment with a new tool, called madmx, which extracts frequent motifs, possibly including don’t care characters, from biological sequences. We introduc...
Roberto Grossi, Andrea Pietracaprina, Nadia Pisant...
BMCBI
2007
145views more  BMCBI 2007»
13 years 9 months ago
Improved benchmarks for computational motif discovery
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...
Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Fi...
BIBE
2009
IEEE
126views Bioinformatics» more  BIBE 2009»
14 years 4 months ago
Mining Positional Association Super-Rules on Fixed-Size Protein Sequence Motifs
— Protein sequence motifs information is crucial to the analysis of biologically significant regions. The conserved regions have the potential to determine the role of the protei...
Bernard Chen, Sinan Kockara