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» The Pre-Image Problem in Kernel Methods
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CSB
2005
IEEE
115views Bioinformatics» more  CSB 2005»
14 years 2 months ago
A New Clustering Strategy with Stochastic Merging and Removing Based on Kernel Functions
With hierarchical clustering methods, divisions or fusions, once made, are irrevocable. As a result, when two elements in a bottom-up algorithm are assigned to one cluster, they c...
Huimin Geng, Hesham H. Ali
BMCBI
2007
153views more  BMCBI 2007»
13 years 8 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
14 years 3 months ago
Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases
Background: Similaritysearch in chemical structure databases is an important problem with many applications in chemical genomics, drug design, and efficient chemical probe screeni...
Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald ...
KDD
2008
ACM
178views Data Mining» more  KDD 2008»
14 years 9 months ago
Training structural svms with kernels using sampled cuts
Discriminative training for structured outputs has found increasing applications in areas such as natural language processing, bioinformatics, information retrieval, and computer ...
Chun-Nam John Yu, Thorsten Joachims
JMLR
2006
112views more  JMLR 2006»
13 years 8 months ago
Kernels on Prolog Proof Trees: Statistical Learning in the ILP Setting
We develop kernels for measuring the similarity between relational instances using background knowledge expressed in first-order logic. The method allows us to bridge the gap betw...
Andrea Passerini, Paolo Frasconi, Luc De Raedt