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    BMCBI
    2006
    157views more  BMCBI 2006»
    Determination of the minimum number of microarray experiments for discovery of gene expression patterns
    13 years 9 months ago
    Determination of the minimum number of microarray experiments for discovery of gene expression patterns
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    Background: One type of DNA microarray experiment is discovery of gene expression patterns for a cell line undergoing a biological process over a series of time points. Two import...
    Fang-Xiang Wu, W. J. Zhang, Anthony J. Kusalik
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    BMCBI
    2006
    86views more  BMCBI 2006»
    MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
    13 years 9 months ago
    MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
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    Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
    Jun Wang, Peter D. Keightley, Toby Johnson
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    CPHYSICS
    2006
    103views more  CPHYSICS 2006»
    WATERWAVES: wave particles dynamics on a complex triatomic potential
    13 years 9 months ago
    WATERWAVES: wave particles dynamics on a complex triatomic potential
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    The WATERWAVES program suite performs complex scattering calculations by propagating a wave packet in a complex, full-dimensional potential for non-rotating (J = 0) but vibrating ...
    Simone Taioli, Jonathan Tennyson
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    BMCBI
    2007
    160views more  BMCBI 2007»
    Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
    13 years 9 months ago
    Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
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    Background: Affymetrix GeneChips are a popular platform for performing whole-genome experiments on the transcriptome. There are a range of different calibration steps, and users a...
    Andrew P. Harrison, Caroline E. Johnston, Christin...
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    BMCBI
    2007
    148views more  BMCBI 2007»
    Computation of significance scores of unweighted Gene Set Enrichment Analyses
    13 years 9 months ago
    Computation of significance scores of unweighted Gene Set Enrichment Analyses
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    Background: Gene Set Enrichment Analysis (GSEA) is a computational method for the statistical evaluation of sorted lists of genes or proteins. Originally GSEA was developed for in...
    Andreas Keller, Christina Backes, Hans-Peter Lenho...
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