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» The Proportional Genetic Algorithm: Gene Expression in a Gen...
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CEC
2008
IEEE
14 years 1 months ago
Geometric PSO + GP = Particle Swarm Programming
—Geometric particle swarm optimization (GPSO) is a recently introduced formal generalization of traditional particle swarm optimization (PSO) that applies naturally to both conti...
Julian Togelius, Renzo De Nardi, Alberto Moraglio
BMCBI
2007
152views more  BMCBI 2007»
13 years 7 months ago
Difference-based clustering of short time-course microarray data with replicates
Background: There are some limitations associated with conventional clustering methods for short time-course gene expression data. The current algorithms require prior domain know...
Jihoon Kim, Ju Han Kim
ACMSE
2006
ACM
14 years 1 months ago
Automatic quality assessment of Affymetrix GeneChip data
Computing reliable gene expression levels from microarray experiments is a sophisticated process with many potential pitfalls. Quality control is one of the most important steps i...
Steffen Heber, Beate Sick
GECCO
2005
Springer
140views Optimization» more  GECCO 2005»
14 years 28 days ago
MDGA: motif discovery using a genetic algorithm
Computationally identifying transcription factor binding sites in the promoter regions of genes is an important problem in computational biology and has been under intensive resea...
Dongsheng Che, Yinglei Song, Khaled Rasheed
GECCO
2007
Springer
258views Optimization» more  GECCO 2007»
13 years 11 months ago
TFBS identification by position- and consensus-led genetic algorithm with local filtering
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee