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SIGMOD
2011
ACM
150views Database» more  SIGMOD 2011»
12 years 11 months ago
WHAM: a high-throughput sequence alignment method
Over the last decade the cost of producing genomic sequences has dropped dramatically due to the current so called “next-gen” sequencing methods. However, these next-gen seque...
Yinan Li, Allison Terrell, Jignesh M. Patel
INFOCOM
2009
IEEE
14 years 3 months ago
Tracking with Unreliable Node Sequences
—Tracking mobile targets using sensor networks is a challenging task because of the impacts of in-the-filed factors such as environment noise, sensing irregularity and etc. This...
Ziguo Zhong, Ting Zhu, Dan Wang, Tian He
IPPS
2010
IEEE
13 years 6 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
ISCAS
1993
IEEE
125views Hardware» more  ISCAS 1993»
14 years 22 days ago
A VLSI Implementation of a Cascade Viterbi Decoder with Traceback
- A novel VLSI implementation of the Viterbi algorithm based on a cascade architecture is presented. Survivor sequence memory management is implemented using a new single read poin...
Gennady Feygin, Paul Chow, P. Glenn Gulak, John Ch...
DNA
2005
Springer
14 years 2 months ago
Two Proteins for the Price of One: The Design of Maximally Compressed Coding Sequences
Abstract. The emerging field of synthetic biology moves beyond conventional genetic manipulation to construct novel life forms which do not originate in nature. We explore the pro...
Bei Wang, Dimitris Papamichail, Steffen Mueller, S...