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BMCBI
2008
113views more  BMCBI 2008»
13 years 8 months ago
Investigating selection on viruses: a statistical alignment approach
Background: Two problems complicate the study of selection in viral genomes: Firstly, the presence of genes in overlapping reading frames implies that selection in one reading fra...
Saskia de Groot, Thomas Mailund, Gerton Lunter, Jo...
IGPL
2010
158views more  IGPL 2010»
13 years 7 months ago
Ontology-revision operators based on reinterpretation
Communication between natural or artificial agents relies on the use of a common vocabulary. Since sharing terms does not necessarily imply that the terms have exactly the same m...
Carola Eschenbach, Özgür L. Öz&cced...
BMCBI
2011
13 years 3 months ago
RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome contigs assembled from DNA reads of environmental samples. Because of the diver...
Ozkan U. Nalbantoglu, Samuel F. Way, Steven H. Hin...
ISCA
2005
IEEE
154views Hardware» more  ISCA 2005»
14 years 2 months ago
Temporal Streaming of Shared Memory
Coherent read misses in shared-memory multiprocessors account for a substantial fraction of execution time in many important scientific and commercial workloads. We propose Tempor...
Thomas F. Wenisch, Stephen Somogyi, Nikolaos Harda...
ISMB
2000
13 years 10 months ago
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...