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» The Structure Function and Distinguishable Models of Data
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BMCBI
2008
101views more  BMCBI 2008»
13 years 9 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...
NAR
2007
136views more  NAR 2007»
13 years 8 months ago
DBAli tools: mining the protein structure space
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
Marc A. Martí-Renom, Ursula Pieper, Mallur ...
BMCBI
2002
129views more  BMCBI 2002»
13 years 8 months ago
SeqHound: biological sequence and structure database as a platform for bioinformatics research
Background: SeqHound has been developed as an integrated biological sequence, taxonomy, annotation and 3-D structure database system. It provides a high-performance server platfor...
Katerina Michalickova, Gary D. Bader, Michel Dumon...
OTM
2005
Springer
14 years 2 months ago
Spatio-temporal Schema Integration with Validation: A Practical Approach
We propose to enhance a schema integration process with a validation phase employing logic-based data models. In our methodology, we validate the source schemas against the data mo...
Anastasiya Sotnykova, Nadine Cullot, Christelle Va...
WWW
2008
ACM
14 years 9 months ago
User oriented link function classification
Currently most link-related applications treat all links in the same web page to be identical. One link-related application usually requires one certain property of hyperlinks but...
Mingliang Zhu, Weiming Hu, Ou Wu, Xi Li, Xiaoqin Z...