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    WABI
    2007
    Springer
    102views Bioinformatics» more  WABI 2007»
    Homology Search with Fragmented Nucleic Acid Sequence Patterns
    14 years 25 days ago
    Homology Search with Fragmented Nucleic Acid Sequence Patterns
    Download  www.bioinf.uni-leipzig.de
    The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
    Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
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    CPHYSICS
    2008
    123views more  CPHYSICS 2008»
    wannier90: A tool for obtaining maximally-localised Wannier functions
    13 years 6 months ago
    wannier90: A tool for obtaining maximally-localised Wannier functions
    Download  www.physics.rutgers.edu
    We present wannier90, a program for calculating maximally-localised Wannier functions (MLWF) from a set of Bloch energy bands that may or may not be attached to or mixed with othe...
    Arash A. Mostofi, Jonathan R. Yates, Young-Su Lee,...
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    BMCBI
    2006
    180views more  BMCBI 2006»
    The Gaggle: An open-source software system for integrating bioinformatics software and data sources
    13 years 6 months ago
    The Gaggle: An open-source software system for integrating bioinformatics software and data sources
    Download  www.biomedcentral.com
    Background: Systems biologists work with many kinds of data, from many different sources, using a variety of software tools. Each of these tools typically excels at one type of an...
    Paul T. Shannon, David J. Reiss, Richard Bonneau, ...
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    BMCBI
    2005
    100views more  BMCBI 2005»
    Evolutionary models for insertions and deletions in a probabilistic modeling framework
    13 years 6 months ago
    Evolutionary models for insertions and deletions in a probabilistic modeling framework
    Download  www.biomedcentral.com
    Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
    Elena Rivas
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    BMCBI
    2005
    122views more  BMCBI 2005»
    A neural strategy for the inference of SH3 domain-peptide interaction specificity
    13 years 6 months ago
    A neural strategy for the inference of SH3 domain-peptide interaction specificity
    Download  www.biomedcentral.com
    Background: The SH3 domain family is one of the most representative and widely studied cases of so-called Peptide Recognition Modules (PRM). The polyproline II motif PxxP that gen...
    Enrico Ferraro, Allegra Via, Gabriele Ausiello, Ma...
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