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NAR
2008
125views more  NAR 2008»
13 years 8 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
BMCBI
2008
109views more  BMCBI 2008»
13 years 8 months ago
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Background: Transposable elements are abundant in eukaryotic genomes and it is believed that they have a significant impact on the evolution of gene and chromosome structure. Whil...
David Ellinghaus, Stefan Kurtz, Ute Willhoeft
WCRE
1999
IEEE
14 years 9 days ago
Chava: Reverse Engineering and Tracking of Java Applets
Java applets have been used increasingly on web sites to perform client-side processing and provide dynamic content. While many web site analysis tools are available, their focus ...
Jeffrey L. Korn, Yih-Farn Chen, Eleftherios Koutso...
WCRE
1995
IEEE
13 years 11 months ago
Pattern Matching for Design Concept Localization
A legacy system is an operational, large-scale software system that is maintained beyond its first generation of programmers. It typically represents a massive economic investmen...
Kostas Kontogiannis, Renato de Mori, Morris Bernst...
BMCBI
2008
102views more  BMCBI 2008»
13 years 8 months ago
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
Background: Phylogenies, i.e., the evolutionary histories of groups of taxa, play a major role in representing the interrelationships among biological entities. Many software tool...
Cuong Than, Derek A. Ruths, Luay Nakhleh