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RECOMB
2004
Springer
14 years 8 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
RECOMB
2001
Springer
14 years 8 months ago
A new approach to sequence comparison: normalized sequence alignment
The Smith-Waterman algorithm for local sequence alignment is one of the most important techniques in computational molecular biology. This ingenious dynamic programming approach w...
Abdullah N. Arslan, Ömer Egecioglu, Pavel A. ...
OSDI
2008
ACM
14 years 8 months ago
R2: An Application-Level Kernel for Record and Replay
Library-based record and replay tools aim to reproduce an application's execution by recording the results of selected functions in a log and during replay returning the resu...
Zhenyu Guo, Xi Wang, Jian Tang, Xuezheng Liu, Zhil...
OSDI
2006
ACM
14 years 8 months ago
CRAMM: Virtual Memory Support for Garbage-Collected Applications
Existing virtual memory systems usually work well with applications written in C and C++, but they do not provide adequate support for garbage-collected applications. The performa...
Ting Yang, Emery D. Berger, Scott F. Kaplan, J. El...
OSDI
2006
ACM
14 years 8 months ago
From Uncertainty to Belief: Inferring the Specification Within
Automatic tools for finding software errors require a set of specifications before they can check code: if they do not know what to check, they cannot find bugs. This paper presen...
Ted Kremenek, Paul Twohey, Godmar Back, Andrew Y. ...
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