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BMCBI
2010
147views more  BMCBI 2010»
15 years 6 months ago
Indirect two-sided relative ranking: a robust similarity measure for gene expression data
Background: There is a large amount of gene expression data that exists in the public domain. This data has been generated under a variety of experimental conditions. Unfortunatel...
Louis Licamele, Lise Getoor
BMCBI
2004
117views more  BMCBI 2004»
15 years 5 months ago
CisOrtho: A program pipeline for genome-wide identification of transcription factor target genes using phylogenetic footprinting
Background: All known genomes code for a large number of transcription factors. It is important to develop methods that will reveal how these transcription factors act on a genome...
Henry R. Bigelow, Adam S. Wenick, Allan Wong, Oliv...
NAR
2011
253views Computer Vision» more  NAR 2011»
14 years 8 months ago
tRNADB-CE 2011: tRNA gene database curated manually by experts
We updated the tRNADB-CE by analyzing 939 complete and 1301 draft genomes of prokaryotes and eukaryotes, 171 complete virus genomes, 121 complete chloroplast genomes and approxima...
Takashi Abe, Toshimichi Ikemura, Junichi Sugahara,...
CBMS
2007
IEEE
16 years 9 days ago
Auto-Extraction, Representation and Integration of a Diabetes Ontology Using Bayesian Networks
This paper describes how high level biological knowledge obtained from ontologies such as the Gene Ontology (GO) can be integrated with low level information extracted from a Baye...
Kenneth McGarry, Sheila Garfield, Stefan Wermter
CSB
2005
IEEE
180views Bioinformatics» more  CSB 2005»
15 years 11 months ago
Functional Modularity in a Large-Scale Mammalian Molecular Interaction Network
The Ingenuity™ Pathways Knowledge Base (IPKB) contains over one million findings manually curated from the scientific literature. Highly-structured content from the IPKB forms...
Andreas Kramer, Daniel R. Richards, James O. Bowlb...