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BMCBI
2008
100views more  BMCBI 2008»
13 years 11 months ago
Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations
Background: The construction of literature-based networks of gene-gene interactions is one of the most important applications of text mining in bioinformatics. Extracting potentia...
Hyunsoo Kim, Haesun Park, Barry L. Drake
BMCBI
2007
128views more  BMCBI 2007»
13 years 11 months ago
Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements
Background: Arabidopsis thaliana is the model species of current plant genomic research with a genome size of 125 Mb and approximately 28,000 genes. The function of half of these ...
Hui Lan, Rachel Carson, Nicholas J. Provart, Antho...
BMCBI
2005
152views more  BMCBI 2005»
13 years 10 months ago
CoPub Mapper: mining MEDLINE based on search term co-publication
Background: High throughput microarray analyses result in many differentially expressed genes that are potentially responsible for the biological process of interest. In order to ...
Blaise T. F. Alako, Antoine Veldhoven, Sjozef van ...
CSB
2004
IEEE
106views Bioinformatics» more  CSB 2004»
14 years 2 months ago
Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli
RNA genes lack most of the signals used for protein gene identification. A major shortcoming of previous discriminative methods to distinguish functional RNA (fRNA) genes from oth...
Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, S...
TSMC
2008
105views more  TSMC 2008»
13 years 10 months ago
Gene Identification: Classical and Computational Intelligence Approaches
: Automatic identification of genes has been an actively researched area of Bioinformatics. Compared to earlier attempts for finding genes, the recent techniques are significantly ...
Sanghamitra Bandyopadhyay, Ujjwal Maulik, D. Roy