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BMCBI
2010
110views more  BMCBI 2010»
13 years 9 months ago
Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data
Background: Phosphorylation is a ubiquitous and fundamental regulatory mechanism that controls signal transduction in living cells. The number of identified phosphoproteins and th...
Haruna Imamura, Nozomu Yachie, Rintaro Saito, Yasu...
TVCG
2010
188views more  TVCG 2010»
13 years 7 months ago
Analyzing and Tracking Burning Structures in Lean Premixed Hydrogen Flames
— This paper presents topology-based methods to robustly extract, analyze, and track features defined as subsets of isosurfaces. First, we demonstrate how features identified b...
Peer-Timo Bremer, Gunther H. Weber, Valerio Pascuc...
BMCBI
2010
90views more  BMCBI 2010»
13 years 9 months ago
PuTmiR: A database for extracting neighboring transcription factors of human microRNAs
Background: Some of the recent investigations in systems biology have revealed the existence of a complex regulatory network between genes, microRNAs (miRNAs) and transcription fa...
Sanghamitra Bandyopadhyay, Malay Bhattacharyya
BMCBI
2007
157views more  BMCBI 2007»
13 years 9 months ago
Improving gene set analysis of microarray data by SAM-GS
Background: Gene-set analysis evaluates the expression of biological pathways, or a priori defined gene sets, rather than that of individual genes, in association with a binary ph...
Irina Dinu, John D. Potter, Thomas Mueller, Qi Liu...
ICML
2007
IEEE
14 years 9 months ago
Recovering temporally rewiring networks: a model-based approach
A plausible representation of relational information among entities in dynamic systems such as a living cell or a social community is a stochastic network which is topologically r...
Fan Guo, Steve Hanneke, Wenjie Fu, Eric P. Xing