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» The complexity of stochastic sequences
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TON
2012
11 years 11 months ago
Scalable Lookahead Regular Expression Detection System for Deep Packet Inspection
—Regular expressions (RegExes) are widely used, yet their inherent complexity often limits the total number of RegExes that can be detected using a single chip for a reasonable t...
Masanori Bando, N. Sertac Artan, H. Jonathan Chao
SDM
2012
SIAM
208views Data Mining» more  SDM 2012»
11 years 11 months ago
Mining Massive Archives of Mice Sounds with Symbolized Representations
Many animals produce long sequences of vocalizations best described as “songs.” In some animals, such as crickets and frogs, these songs are relatively simple and repetitive c...
Jesin Zakaria, Sarah Rotschafer, Abdullah Mueen, K...
STOC
2005
ACM
184views Algorithms» more  STOC 2005»
14 years 2 months ago
Coresets in dynamic geometric data streams
A dynamic geometric data stream consists of a sequence of m insert/delete operations of points from the discrete space {1, . . . , ∆}d [26]. We develop streaming (1 + )-approxim...
Gereon Frahling, Christian Sohler
BMCBI
2010
119views more  BMCBI 2010»
13 years 8 months ago
Multi-task learning for cross-platform siRNA efficacy prediction: an in-silico study
Background: Gene silencing using exogenous small interfering RNAs (siRNAs) is now a widespread molecular tool for gene functional study and new-drug target identification. The key...
Qi Liu, Qian Xu, Vincent Wenchen Zheng, Hong Xue, ...
BMCBI
2010
167views more  BMCBI 2010»
13 years 8 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...