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» The ed-tree: An Index for Large DNA Sequence Databases
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CIKM
2004
Springer
14 years 29 days ago
Discovering frequently changing structures from historical structural deltas of unordered XML
Recently, a large amount of work has been done in XML data mining. However, we observed that most of the existing works focus on the snapshot XML data, while XML data is dynamic i...
Qiankun Zhao, Sourav S. Bhowmick, Mukesh K. Mohani...
BMCBI
2007
109views more  BMCBI 2007»
13 years 7 months ago
Discarding duplicate ditags in LongSAGE analysis may introduce significant error
Background: During gene expression analysis by Serial Analysis of Gene Expression (SAGE), duplicate ditags are routinely removed from the data analysis, because they are suspected...
Jeppe Emmersen, Anna M. Heidenblut, Annabeth Laurs...
ADBIS
2000
Springer
117views Database» more  ADBIS 2000»
13 years 11 months ago
Multiversion Linear Quadtree for Spatio-Temporal Data
Research in spatio-temporal databases has largely focused on extensions of access methods for the proper handling of time changing spatial information. In this paper, we present th...
Theodoros Tzouramanis, Michael Vassilakopoulos, Ya...
TCBB
2008
95views more  TCBB 2008»
13 years 7 months ago
Solving the Problem of Trans-Genomic Query with Alignment Tables
Abstract-- The trans-genomic query (TGQ) problem -- enabling the free query of biological information, even across genomes -- is a central challenge facing bioinformatics. Solution...
Douglas Stott Parker Jr., Ruey-Lung Hsiao, Yi Xing...
BMCBI
2005
94views more  BMCBI 2005»
13 years 7 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel