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» The elastic net algorithm and protein structure prediction
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NAR
2011
211views Computer Vision» more  NAR 2011»
12 years 10 months ago
DIMA 3.0: Domain Interaction Map
Domain Interaction MAp (DIMA, available at http:// webclu.bio.wzw.tum.de/dima) is a database of predicted and known interactions between protein domains. It integrates 5807 struct...
Qibin Luo, Philipp Pagel, Baiba Vilne, Dmitrij Fri...
ICDM
2008
IEEE
136views Data Mining» more  ICDM 2008»
14 years 2 months ago
Generalized Framework for Syntax-Based Relation Mining
Supervised approaches to Data Mining are particularly appealing as they allow for the extraction of complex relations from data objects. In order to facilitate their application i...
Bonaventura Coppola, Alessandro Moschitti, Daniele...
AAAI
2010
13 years 9 months ago
Structure Learning for Markov Logic Networks with Many Descriptive Attributes
Many machine learning applications that involve relational databases incorporate first-order logic and probability. Markov Logic Networks (MLNs) are a prominent statistical relati...
Hassan Khosravi, Oliver Schulte, Tong Man, Xiaoyua...
BMCBI
2006
117views more  BMCBI 2006»
13 years 7 months ago
Incorporating background frequency improves entropy-based residue conservation measures
Background: Several entropy-based methods have been developed for scoring sequence conservation in protein multiple sequence alignments. High scoring amino acid positions may corr...
Kai Wang, Ram Samudrala
BMCBI
2005
162views more  BMCBI 2005»
13 years 7 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes