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» The elastic net algorithm and protein structure prediction
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RECOMB
2006
Springer
14 years 7 months ago
A Study of Accessible Motifs and RNA Folding Complexity
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...
Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Zi...
IPPS
2008
IEEE
14 years 2 months ago
Parallel mining of closed quasi-cliques
Graph structure can model the relationships among a set of objects. Mining quasi-clique patterns from large dense graph data makes sense with respect to both statistic and applica...
Yuzhou Zhang, Jianyong Wang, Zhiping Zeng, Lizhu Z...
BIOINFORMATICS
2007
151views more  BIOINFORMATICS 2007»
13 years 7 months ago
A new protein-protein docking scoring function based on interface residue properties
Motivation: Protein–protein complexes are known to play key roles in many cellular processes. However, they are often not accessible to experimental study because of their low s...
Julie Bernauer, Jérôme Azé, Jo...
IJHPCA
2007
88views more  IJHPCA 2007»
13 years 7 months ago
Scaling Properties of Common Statistical Operators for Gridded Datasets
An accurate cost-model that accounts for dataset size and structure can help optimize geoscience data analysis. We develop and apply a computational model to estimate data analysi...
Charles S. Zender, Harry Mangalam
BMCBI
2004
196views more  BMCBI 2004»
13 years 7 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar