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CSB
2003
IEEE
124views Bioinformatics» more  CSB 2003»
14 years 4 months ago
SMASHing regulatory sites in DNA by human
Regulatory sequence elements provide important clues to understanding and predicting gene expression. Although the binding sites for hundreds of transcription factors are known, t...
Mihaela Zavolan, Nicholas D. Socci, Nikolaus Rajew...
TAMC
2010
Springer
14 years 3 months ago
Streaming Algorithms for Some Problems in Log-Space
Abstract. In this paper, we give streaming algorithms for some problems which are known to be in deterministic log-space, when the number of passes made on the input is unbounded. ...
Ajesh Babu, Nutan Limaye, Girish Varma
APBC
2004
14 years 5 days ago
EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment
Following advances in biotechnology, many new whole genome sequences are becoming available every year. A lot of useful information can be derived from the alignment and compariso...
Jitender S. Deogun, Jingyi Yang, Fangrui Ma
BMCBI
2010
118views more  BMCBI 2010»
13 years 11 months ago
Predicting nucleosome positioning using a duration Hidden Markov Model
Background: The nucleosome is the fundamental packing unit of DNAs in eukaryotic cells. Its detailed positioning on the genome is closely related to chromosome functions. Increasi...
Liqun Xi, Yvonne Fondufe-Mittendorf, Lei Xia, Jare...
BMCBI
2010
102views more  BMCBI 2010»
13 years 11 months ago
Alignment and clustering of phylogenetic markers - implications for microbial diversity studies
Background: Molecular studies of microbial diversity have provided many insights into the bacterial communities inhabiting the human body and the environment. A common first step ...
James Robert White, Saket Navlakha, Niranjan Nagar...