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NAR
2007
100views more  NAR 2007»
13 years 9 months ago
CSRDB: a small RNA integrated database and browser resource for cereals
Plant small RNAs (smRNAs), which include microRNAs (miRNAs), short interfering RNAs (siRNAs) and trans-acting siRNAs (ta-siRNAs), are emerging as significant components of epigene...
Cameron Johnson, Lewis Bowman, Alex T. Adai, Vicki...
NAR
2011
208views Computer Vision» more  NAR 2011»
13 years 20 days ago
Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics
Tomato Functional Genomics Database (TFGD) provides a comprehensive resource to store, query, mine, analyze, visualize and integrate large-scale tomato functional genomics data se...
Zhangjun Fei, Je-Gun Joung, Xuemei Tang, Yi Zheng,...
NAR
2011
214views Computer Vision» more  NAR 2011»
13 years 20 days ago
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
MicroRNAs (miRNAs) represent an important class of small non-coding RNAs (sRNAs) that regulate gene expression by targeting messenger RNAs. However, assigning miRNAs to their regu...
Jian-Hua Yang, Jun-Hao Li, Peng Shao, Hui Zhou, Yu...
NAR
2011
253views Computer Vision» more  NAR 2011»
13 years 20 days ago
tRNADB-CE 2011: tRNA gene database curated manually by experts
We updated the tRNADB-CE by analyzing 939 complete and 1301 draft genomes of prokaryotes and eukaryotes, 171 complete virus genomes, 121 complete chloroplast genomes and approxima...
Takashi Abe, Toshimichi Ikemura, Junichi Sugahara,...
NAR
2000
121views more  NAR 2000»
13 years 9 months ago
Database of non-canonical base pairs found in known RNA structures
Atomic resolution RNA structures are being published at an increasing rate. It is common to find a modest number of non-canonical base pairs in these structures in addition to the...
Uma Nagaswamy, Neil Voss, Zhengdong Zhang, George ...