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BIOINFORMATICS
2007
151views more  BIOINFORMATICS 2007»
13 years 7 months ago
A new protein-protein docking scoring function based on interface residue properties
Motivation: Protein–protein complexes are known to play key roles in many cellular processes. However, they are often not accessible to experimental study because of their low s...
Julie Bernauer, Jérôme Azé, Jo...
BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
Structural descriptor database: a new tool for sequence-based functional site prediction
Background: The Structural Descriptor Database (SDDB) is a web-based tool that predicts the function of proteins and functional site positions based on the structural properties o...
Juliana S. Bernardes, Jorge H. Fernandez, Ana Tere...
IJFCS
2006
130views more  IJFCS 2006»
13 years 7 months ago
Mealy multiset automata
We introduce the networks of Mealy multiset automata, and study their computational power. The networks of Mealy multiset automata are computationally complete. 1 Learning from Mo...
Gabriel Ciobanu, Viorel Mihai Gontineac
ENTCS
2006
155views more  ENTCS 2006»
13 years 7 months ago
Biomolecular Agents as Multi-behavioural Concurrent Objects
In recent years, there has been increasing interest in computational models of biological systems based on various calculi of communicating processes, such as the stochastic pi-ca...
Denys Duchier, Céline Kuttler
BMCBI
2007
157views more  BMCBI 2007»
13 years 7 months ago
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...