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BMCBI
2010
131views more  BMCBI 2010»
15 years 4 months ago
Prediction of epigenetically regulated genes in breast cancer cell lines
Background: Methylation of CpG islands within the DNA promoter regions is one mechanism that leads to aberrant gene expression in cancer. In particular, the abnormal methylation o...
Leandro A. Loss, Anguraj Sadanandam, Steffen Durin...
BMCBI
2010
164views more  BMCBI 2010»
15 years 4 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
BMCBI
2005
77views more  BMCBI 2005»
15 years 4 months ago
Ontological visualization of protein-protein interactions
Background: Cellular processes require the interaction of many proteins across several cellular compartments. Determining the collective network of such interactions is an importa...
Harold J. Drabkin, Christopher Hollenbeck, David P...
PVLDB
2008
131views more  PVLDB 2008»
15 years 4 months ago
Learning to create data-integrating queries
The number of potentially-related data resources available for querying -- databases, data warehouses, virtual integrated schemas -continues to grow rapidly. Perhaps no area has s...
Partha Pratim Talukdar, Marie Jacob, Muhammad Salm...
WEBI
2010
Springer
15 years 2 months ago
A Scalable Indexing Mechanism for Ontology-Based Information Integration
In recent years, there has been an explosion of publicly available RDF and OWL web pages. Some of these pages are static text files, while others are dynamically generated from la...
Yingjie Li, Abir Qasem, Jeff Heflin