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» Theoretical and Experimental DNA Computation
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ICPADS
2005
IEEE
14 years 10 days ago
Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors
New biological experimental techniques are continuing to generate large amounts of data using DNA, RNA, human genome and protein sequences. The quantity and quality of data from t...
Xiandong Meng, Vipin Chaudhary
BMCBI
2007
163views more  BMCBI 2007»
13 years 6 months ago
Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approac
Background: Microarrays are widely used for the study of gene expression; however deciding on whether observed differences in expression are significant remains a challenge. Resul...
Carmen Pin, Mark Reuter
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
14 years 27 days ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
SODA
2008
ACM
108views Algorithms» more  SODA 2008»
13 years 8 months ago
Dimension augmentation and combinatorial criteria for efficient error-resistant DNA self-assembly
DNA self-assembly has emerged as a rich and promising primitive for nano-technology. Experimental and analytical evidence indicates that such systems are prone to errors, and acco...
Ho-Lin Chen, Ashish Goel, Chris Luhrs
ACST
2006
13 years 8 months ago
PDC: Pattern discovery with confidence in DNA sequences
Pattern discovery in DNA sequences is one of the most challenging tasks in molecular biology and computer science. The main goal of pattern discovery in DNA sequences is to identi...
Yi Lu, Shiyong Lu, Farshad Fotouhi, Yan Sun, Zijia...