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ICMLA
2007
13 years 8 months ago
SVMotif: A Machine Learning Motif Algorithm
We describe SVMotif, a support vector machine-based learning algorithm for identification of cellular DNA transcription factor (TF) motifs extrapolated from known TF-gene interact...
Mark A. Kon, Yue Fan, Dustin T. Holloway, Charles ...
BMCBI
2011
12 years 11 months ago
Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data
Background: Statistical methods for ranking differentially expressed genes (DEGs) from gene expression data should be evaluated with regard to high sensitivity, specificity, and r...
Koji Kadota, Kentaro Shimizu
BMCBI
2011
12 years 11 months ago
Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in Bre
Background: Elucidating the exact relationship between gene copy number and expression would enable identification of regulatory mechanisms of abnormal gene expression and biologi...
Hiroko K. Solvang, Ole Christian Lingjærde, ...
PAMI
2011
12 years 10 months ago
Meta-Recognition: The Theory and Practice of Recognition Score Analysis
Abstract—In this paper, we define meta-recognition, a performance prediction method for recognition algorithms, and examine the theoretical basis for its post-recognition score ...
Walter J. Scheirer, Anderson Rocha, Ross J. Michea...
ICASSP
2009
IEEE
14 years 2 months ago
Testing fractal connectivity in multivariate long memory processes
Within the framework of long memory multivariate processes, fractal connectivity is a particular model, in which the low frequencies (coarse scales) of the interspectrum of each p...
Herwig Wendt, Antoine Scherrer, Patrice Abry, Soph...