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» Three Improvements to the BLASTP Search of Genome Databases
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RECOMB
2004
Springer
14 years 8 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
BMCBI
2006
89views more  BMCBI 2006»
13 years 7 months ago
SPODOBASE : an EST database for the lepidopteran crop pest Spodoptera
Background: The Lepidoptera Spodoptera frugiperda is a pest which causes widespread economic damage on a variety of crop plants. It is also well known through its famous Sf9 cell ...
Vincent Nègre, Thierry Hotelier, Anne-Natha...
VLDB
2007
ACM
126views Database» more  VLDB 2007»
14 years 7 months ago
SOR: A Practical System for Ontology Storage, Reasoning and Search
Ontology, an explicit specification of shared conceptualization, has been increasingly used to define formal data semantics and improve data reusability and interoperability in en...
Chen Wang, Jean-Sébastien Brunner, Jing Lu,...
BMCBI
2008
151views more  BMCBI 2008»
13 years 7 months ago
An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases
Background: Studies on the relationship between disease and genetic variations such as single nucleotide polymorphisms (SNPs) are important. Genetic variations can cause disease b...
Jin Ok Yang, Sohyun Hwang, Jeongsu Oh, Jong Bhak, ...
ICDE
2006
IEEE
162views Database» more  ICDE 2006»
14 years 9 months ago
Efficient Batch Top-k Search for Dictionary-based Entity Recognition
We consider the problem of speeding up Entity Recognition systems that exploit existing large databases of structured entities to improve extraction accuracy. These systems requir...
Amit Chandel, P. C. Nagesh, Sunita Sarawagi