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» Three Improvements to the BLASTP Search of Genome Databases
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EDBT
2010
ACM
153views Database» more  EDBT 2010»
14 years 2 months ago
Suggestion of promising result types for XML keyword search
Although keyword query enables inexperienced users to easily search XML database with no specific knowledge of complex structured query languages or XML data schemas, the ambigui...
Jianxin Li, Chengfei Liu, Rui Zhou, Wei Wang
BMCBI
2010
135views more  BMCBI 2010»
13 years 7 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
BMCBI
2008
158views more  BMCBI 2008»
13 years 7 months ago
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics
spectives. A total of 149 abstracts were accepted and presented in the poster session and 31 of them were selected for oral presentation. At the opening of the meeting, Roderic Gui...
Graziano Pesole, Manuela Helmer-Citterich
SIGMOD
1998
ACM
143views Database» more  SIGMOD 1998»
13 years 12 months ago
Interaction of Query Evaluation and Buffer Management for Information Retrieval
The proliferation of the World Wide Web has brought information retrieval (IR) techniques to the forefront of search technology. To the average computer user, “searching” now ...
Björn Þór Jónsson, Michae...
BMCBI
2007
233views more  BMCBI 2007»
13 years 7 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong