In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
Learning a sequence classifier means learning to predict a sequence of output tags based on a set of input data items. For example, recognizing that a handwritten word is "ca...
In this paper, we survey the current state-ofart models for structured learning problems, including Hidden Markov Model (HMM), Conditional Random Fields (CRF), Averaged Perceptron...
Reaching movements require the brain to generate motor commands that rely on an internal model of the task's dynamics. Here we consider the errors that subjects make early in...
Contextual information is important for sequence modeling. Hidden Markov Models (HMMs) and extensions, which have been widely used for sequence modeling, make simplifying, often u...