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IPL
2006
67views more  IPL 2006»
13 years 8 months ago
A remark on the subsequence problem for arc-annotated sequences with pairwise nested arcs
The Arc-Preserving Subsequence (APS) problem appears in the comparison of RNA structures in computational biology. Given two arcannotated sequences of length n and m < n, APS a...
Peter Damaschke
COCOON
2008
Springer
13 years 10 months ago
Sequence Alignment Algorithms for Run-Length-Encoded Strings
A unified framework is applied to solving various sequence comparison problems for run-length encoded strings. All of these algorithms take O(min{mn , m n}) time and O(max{m, n}) s...
Guan-Shieng Huang, Jia Jie Liu, Yue-Li Wang
CIBCB
2007
IEEE
14 years 3 months ago
A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins
Abstract— We applied Support Vector Machines to the prediction of the subcellular localization of transmembrane proteins, and compared the performance of different sequence kerne...
Stefan Maetschke, Marcus Gallagher, Mikael Bod&eac...
ICIP
2008
IEEE
14 years 10 months ago
A video Time Encoding Machine
Time encoding is a real-time asynchronus mechanism of mapping analog amplitude information into multidimensional time sequences. We investigate the exact representation of analog ...
Aurel A. Lazar, Eftychios A. Pnevmatikakis
ICML
2003
IEEE
14 years 9 months ago
Decision-tree Induction from Time-series Data Based on a Standard-example Split Test
This paper proposes a novel decision tree for a data set with time-series attributes. Our time-series tree has a value (i.e. a time sequence) of a time-series attribute in its int...
Yuu Yamada, Einoshin Suzuki, Hideto Yokoi, Katsuhi...