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CPM
1999
Springer
99views Combinatorics» more  CPM 1999»
14 years 1 months ago
On the Complexity of Positional Sequencing by Hybridization
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...
BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
13 years 11 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
BIOCOMP
2009
13 years 10 months ago
Improving Remote Homology Detection Using Sequence Properties and Position Specific Scoring Matrices
Current biological sequence comparison tools frequently fail to recognize matches between homologs when sequence similarity is below the twilight zone of less than 25% sequence id...
Gina Cooper, Michael L. Raymer
CP
2007
Springer
14 years 3 months ago
Encodings of the Sequence Constraint
Abstract. The SEQUENCE constraint is useful in modelling car sequencing, rostering, scheduling and related problems. We introduce half a dozen new encodings of the SEQUENCE constra...
Sebastian Brand, Nina Narodytska, Claude-Guy Quimp...
ICCV
2005
IEEE
14 years 11 months ago
Periodic Motion Detection and Segmentation via Approximate Sequence Alignment
A method for detecting and segmenting periodic motion is presented. We exploit periodicity as a cue and detect periodic motion in complex scenes where common methods for motion se...
Ivan Laptev, Josh Wills, Patrick Pérez, Ser...