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» TopoGSA: network topological gene set analysis
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ALMOB
2007
111views more  ALMOB 2007»
13 years 9 months ago
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
BMCBI
2008
153views more  BMCBI 2008»
13 years 9 months ago
Estimating the size of the solution space of metabolic networks
Background: Cellular metabolism is one of the most investigated system of biological interactions. While the topological nature of individual reactions and pathways in the network...
Alfredo Braunstein, Roberto Mulet, Andrea Pagnani
JCB
2008
81views more  JCB 2008»
13 years 9 months ago
Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns
Traditionally nonrecombinant genome, i.e., mtDNA or Y chromosome, has been used for phylogeography, notably for ease of analysis. The topology of the phylogeny structure in this c...
Laxmi Parida, Marta Melé, Francesc Calafell...
CORR
2006
Springer
81views Education» more  CORR 2006»
13 years 9 months ago
The Workshop on Internet Topology (WIT) Report
Internet topology analysis has recently experienced a surge of interest in computer science, physics, and the mathematical sciences. However, researchers from these different disc...
Dmitri V. Krioukov, Fan R. K. Chung, Kimberly C. C...
BMCBI
2007
135views more  BMCBI 2007»
13 years 9 months ago
Detecting multivariate differentially expressed genes
Background: Gene expression is governed by complex networks, and differences in expression patterns between distinct biological conditions may therefore be complex and multivariat...
Roland Nilsson, José M. Peña, Johan ...