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» TopoGSA: network topological gene set analysis
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SMI
2005
IEEE
14 years 2 months ago
Mesh Editing with an Embedded Network of Curves
We propose a new topological data structure for representing a set of polygonal curves embedded in a meshed surface. In this embedding, the vertices of the curve do not necessaril...
Wan-Chiu Li, Bruno Lévy, Jean-Claude Paul
BMCBI
2007
129views more  BMCBI 2007»
13 years 9 months ago
Integrated network reconstruction, visualization and analysis using YANAsquare
Background: Modeling of metabolic networks includes tasks such as network assembly, network overview, calculation of metabolic fluxes and testing the robustness of the network. Re...
Roland Schwarz, Chunguang Liang, Christoph Kaleta,...
NAR
2006
188views more  NAR 2006»
13 years 9 months ago
BiologicalNetworks: visualization and analysis tool for systems biology
Systemslevelinvestigationofgenomicscaleinformation requires the development of truly integrated databases dealing with heterogeneous data, which can be queried for simple properti...
Michael Baitaluk, Mayya Sedova, Animesh Ray, Amarn...
BMCBI
2010
135views more  BMCBI 2010»
13 years 9 months ago
Lists2Networks: Integrated analysis of gene/protein lists
Background: Systems biologists are faced with the difficultly of analyzing results from large-scale studies that profile the activity of many genes, RNAs and proteins, applied in ...
Alexander Lachmann, Avi Ma'ayan
BMCBI
2007
111views more  BMCBI 2007»
13 years 9 months ago
Modular co-evolution of metabolic networks
Background: The architecture of biological networks has been reported to exhibit high level of modularity, and to some extent, topological modules of networks overlap with known f...
Jing Zhao, Guohui Ding, Lin Tao, Hong Yu, Zhong-Ha...