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BMCBI
2008
103views more  BMCBI 2008»
13 years 7 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
BMCBI
2007
115views more  BMCBI 2007»
13 years 7 months ago
Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
Background: In structural genomics, an important goal is the detection and classification of protein–protein interactions, given the structures of the interacting partners. We h...
Guillaume Launay, Raul Mendez, Shoshana J. Wodak, ...
BMCBI
2007
151views more  BMCBI 2007»
13 years 7 months ago
Identification of hot regions in protein-protein interactions by sequential pattern mining
Background: Identification of protein interacting sites is an important task in computational molecular biology. As more and more protein sequences are deposited without available...
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih...
CONCURRENCY
2007
118views more  CONCURRENCY 2007»
13 years 7 months ago
Design and implementation issues for distributed CCA framework interoperability
Component frameworks, including those that support the Common Component Architecture (CCA), represent a promising approach to addressing this challenge, one that is being realized...
Madhusudhan Govindaraju, Michael J. Lewis, Kenneth...
IJSWIS
2006
108views more  IJSWIS 2006»
13 years 7 months ago
Information Retrieval by Semantic Similarity
Abstract. Semantic Similarity relates to computing the similarity between conceptually similar but not necessarily lexically similar terms. Typically, semantic similarity is comput...
Angelos Hliaoutakis, Giannis Varelas, Epimenidis V...