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» Towards knowledge-based gene expression data mining
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BMCBI
2008
125views more  BMCBI 2008»
13 years 8 months ago
Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain
Background: Spatially mapped large scale gene expression databases enable quantitative comparison of data measurements across genes, anatomy, and phenotype. In most ongoing effort...
Christopher Lau, Lydia Ng, Carol Thompson, Sayan D...
IJCSA
2007
98views more  IJCSA 2007»
13 years 8 months ago
Extracted Knowledge Interpretation in mining biological data: a survey
This paper discusses different approaches for integrating biological knowledge in gene expression analysis. Indeed we are interested in the fifth step of microarray analysis pro...
Martine Collard, Ricardo Martínez
KDD
2005
ACM
91views Data Mining» more  KDD 2005»
14 years 9 months ago
On mining cross-graph quasi-cliques
Joint mining of multiple data sets can often discover interesting, novel, and reliable patterns which cannot be obtained solely from any single source. For example, in cross-marke...
Jian Pei, Daxin Jiang, Aidong Zhang
BMCBI
2010
112views more  BMCBI 2010»
13 years 8 months ago
Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships
Background: The large amount of high-throughput genomic data has facilitated the discovery of the regulatory relationships between transcription factors and their target genes. Wh...
Junhee Seok, Amit Kaushal, Ronald W. Davis, Wenzho...
JMLR
2010
125views more  JMLR 2010»
13 years 3 months ago
On utility of gene set signatures in gene expression-based cancer class prediction
Machine learning methods that can use additional knowledge in their inference process are central to the development of integrative bioinformatics. Inclusion of background knowled...
Minca Mramor, Marko Toplak, Gregor Leban, Tomaz Cu...