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BMCBI
2005
86views more  BMCBI 2005»
13 years 7 months ago
Generalizations of Markov model to characterize biological sequences
Background: The currently used kth order Markov models estimate the probability of generating a single nucleotide conditional upon the immediately preceding (gap = 0) k units. How...
Junwen Wang, Sridhar Hannenhalli
NIPS
2003
13 years 8 months ago
Inferring State Sequences for Non-linear Systems with Embedded Hidden Markov Models
We describe a Markov chain method for sampling from the distribution of the hidden state sequence in a non-linear dynamical system, given a sequence of observations. This method u...
Radford M. Neal, Matthew J. Beal, Sam T. Roweis
AIIA
2007
Springer
14 years 1 months ago
Structured Hidden Markov Model: A General Framework for Modeling Complex Sequences
Structured Hidden Markov Model (S-HMM) is a variant of Hierarchical Hidden Markov Model that shows interesting capabilities of extracting knowledge from symbolic sequences. In fact...
Ugo Galassi, Attilio Giordana, Lorenza Saitta
ICPR
2006
IEEE
14 years 8 months ago
On Authorship Attribution via Markov Chains and Sequence Kernels
We investigate the use of recently proposed character and word sequence kernels for the task of authorship attribution and compare their performance with two probabilistic approac...
Conrad Sanderson, Simon Günter
NIPS
2004
13 years 8 months ago
A Hidden Markov Model for de Novo Peptide Sequencing
De novo Sequencing of peptides is a challenging task in proteome research. While there exist reliable DNA-sequencing methods, the highthroughput de novo sequencing of proteins by ...
Bernd Fischer, Volker Roth, Joachim M. Buhmann, Jo...