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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 1 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
CPHYSICS
2008
96views more  CPHYSICS 2008»
13 years 7 months ago
Moment distributions of clusters and molecules in the adiabatic rotor model
We present a Fortran program to compute the distribution of dipole moments of free particles for use in analyzing molecular beams experiments that measure moments by deflection in...
G. E. Ballentine, G. F. Bertsch, N. Onishi, K. Yab...
AMOST
2007
ACM
13 years 11 months ago
Using LTL rewriting to improve the performance of model-checker based test-case generation
Model-checkers have recently been suggested for automated software test-case generation. Several works have presented methods that create efficient test-suites using model-checker...
Gordon Fraser, Franz Wotawa
HICSS
2002
IEEE
153views Biometrics» more  HICSS 2002»
14 years 9 days ago
Technology Supported Learning Applied to an Innovative, Integrated Curriculum for First-Year Engineering Majors
In September of 1998, the College of Engineering at the University of Massachusetts Dartmouth piloted an innovative, integrated, first-year curriculum. It dramatically changed 31 ...
Paul J. Fortier, Emily Fowler, Raymond N. Laoulach...
RECOMB
2005
Springer
14 years 7 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...