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BMCBI
2007
130views more  BMCBI 2007»
13 years 9 months ago
Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
Background: Recognition of binding sites in proteins is a direct computational approach to the characterization of proteins in terms of biological and biochemical function. Residu...
Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan
BMCBI
2010
127views more  BMCBI 2010»
13 years 9 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
BMCBI
2007
129views more  BMCBI 2007»
13 years 9 months ago
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach
Background: Incorrectly annotated sequence data are becoming more commonplace as databases increasingly rely on automated techniques for annotation. Hence, there is an urgent need...
Carson M. Andorf, Drena Dobbs, Vasant Honavar
CORR
2010
Springer
156views Education» more  CORR 2010»
13 years 9 months ago
On the bias of BFS
Abstract--Breadth First Search (BFS) and other graph traversal techniques are widely used for measuring large unknown graphs, such as online social networks. It has been empiricall...
Maciej Kurant, Athina Markopoulou, Patrick Thiran
CORR
2010
Springer
130views Education» more  CORR 2010»
13 years 9 months ago
Phase Transitions for Greedy Sparse Approximation Algorithms
A major enterprise in compressed sensing and sparse approximation is the design and analysis of computationally tractable algorithms for recovering sparse, exact or approximate, s...
Jeffrey D. Blanchard, Coralia Cartis, Jared Tanner...