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ECCB
2005
IEEE
14 years 2 months ago
A query language for biological networks
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
Ulf Leser
SIGMOD
2008
ACM
145views Database» more  SIGMOD 2008»
13 years 9 months ago
Provenance and scientific workflows: challenges and opportunities
Provenance in the context of workflows, both for the data they derive and for their specification, is an essential component to allow for result reproducibility, sharing, and know...
Susan B. Davidson, Juliana Freire
CIKM
2008
Springer
13 years 11 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
XIMEP
2005
ACM
121views Database» more  XIMEP 2005»
14 years 2 months ago
Adaptive XML Storage or The Importance of Being Lazy
Building an XML store means finding solutions to the problems of representing, accessing, querying and updating XML data. The irregularity of both the structure and usage of XML, ...
Cristian Duda, Donald Kossmann
ICDE
2008
IEEE
395views Database» more  ICDE 2008»
15 years 8 months ago
PermJoin: An Efficient Algorithm for Producing Early Results in Multi-join Query Plans
This paper introduces an efficient algorithm for Producing Early Results in Multi-join query plans (PermJoin, for short). While most previous research focuses only on the case of ...
Justin J. Levandoski, Mohamed E. Khalefa, Mohamed ...