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ML
1998
ACM
139views Machine Learning» more  ML 1998»
13 years 7 months ago
The Hierarchical Hidden Markov Model: Analysis and Applications
We introduce, analyze and demonstrate a recursive hierarchical generalization of the widely used hidden Markov models, which we name Hierarchical Hidden Markov Models (HHMM). Our m...
Shai Fine, Yoram Singer, Naftali Tishby
BMCBI
2006
117views more  BMCBI 2006»
13 years 7 months ago
G-InforBIO: integrated system for microbial genomics
Background: Genome databases contain diverse kinds of information, including gene annotations and nucleotide and amino acid sequences. It is not easy to integrate such information...
Naoto Tanaka, Takashi Abe, Satoru Miyazaki, Hideak...
BMCBI
2007
169views more  BMCBI 2007»
13 years 7 months ago
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
Background: In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in ...
Ibtissem Grissa, Gilles Vergnaud, Christine Pource...
ICPR
2008
IEEE
14 years 1 months ago
Birkhoff polytopes, heat kernels and graph complexity
In this paper we use doubly stochastic matrices to establish a link between Birkhoff polytopes and heat kernels on graphs. Based on this analysis we construct a multi-dimensional ...
Francisco Escolano, Edwin R. Hancock, Miguel Angel...
BIB
2002
135views more  BIB 2002»
13 years 7 months ago
Pise: Software for Building Bioinformatics Webs
Pise is interface construction software for bioinformatics applications that run by commandline operations. It creates common, easy to use interfaces to these for the Web, or othe...
Don Gilbert