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» Unavoidable sequences in constructive analysis
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BMCBI
2010
137views more  BMCBI 2010»
13 years 7 months ago
Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
Background: While the pairwise alignments produced by sequence similarity searches are a powerful tool for identifying homologous proteins - proteins that share a common ancestor ...
Michael L. Sierk, Michael E. Smoot, Ellen J. Bass,...
ISOLA
2010
Springer
13 years 5 months ago
Analysing Message Sequence Graph Specifications
We give a detailed construction of a finite-state transition system for a com-connected Message Sequence Graph. Though this result is fairly well-known in the literature there has...
Joy Chakraborty, Deepak D'Souza, K. Narayan Kumar
BMCBI
2007
117views more  BMCBI 2007»
13 years 7 months ago
Supervised multivariate analysis of sequence groups to identify specificity determining residues
Background: Proteins that evolve from a common ancestor can change functionality over time, and it is important to be able identify residues that cause this change. In this paper ...
Iain M. Wallace, Desmond G. Higgins
FLAIRS
2004
13 years 8 months ago
An Application of Neural Networks to Sequence Analysis and Genre Identification
This study borrowed sequence analysis techniques from the genetic sciences and applied them to a similar problem in email filtering and web searching. Genre identification is the ...
David Bisant
BMCBI
2006
111views more  BMCBI 2006»
13 years 7 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...