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» Unfolding of Microarray Data
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BMCBI
2005
120views more  BMCBI 2005»
13 years 8 months ago
A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools
Background: This paper describes a microarray study including data quality control, data analysis and the analysis of the mechanism of toxicity (MOT) induced by 1-methyl-4-phenylp...
Zengjun Xu, Tucker A. Patterson, Jonathan D. Wren,...
CLADE
2004
IEEE
13 years 11 months ago
Engineering a Peer-to-Peer Collaboratory for Tissue Microarray Research
This paper presents the design, development and evaluation of a prototype peer-to-peer collaboratory for imaging, analyzing, and seamlessly sharing tissue microarrays (TMA), corre...
Cristina Schmidt, Manish Parashar, Wenjin Chen, Da...
BMCBI
2006
131views more  BMCBI 2006»
13 years 8 months ago
The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison
Background: Analysis of DNA microarray data takes as input spot intensity measurements from scanner software and returns differential expression of genes between two conditions, t...
Allan A. Sioson, Shrinivasrao P. Mane, Pinghua Li,...
IPPS
2003
IEEE
14 years 1 months ago
Accurate Method for Fast Design of Diagnostic Oligonucleotide Probe Sets for DNA Microarrays
We present a method for the automatic generation of oligonucleotide probe sets for DNA microarrays. This approach is well suited particularly for specificity evaluation of design...
Andreas Krause, Markus Kräutner, Harald Meier
BIOINFORMATICS
2006
89views more  BIOINFORMATICS 2006»
13 years 8 months ago
Maximum significance clustering of oligonucleotide microarrays
Affymetrix high-density oligonucleotide microarrays measure expression of DNA transcripts using probesets, i.e. multiple probes per transcript. Usually, these multiple measurement...
Dick de Ridder, Frank J. T. Staal, Jacques J. M. v...