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» Unfolding of Microarray Data
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SSPR
2004
Springer
14 years 1 months ago
Feature Shaving for Spectroscopic Data
High-resolution spectroscopy is a powerful industrial tool. The number of features (wavelengths) in these data sets varies from several hundreds up to a thousand. Relevant feature ...
Serguei Verzakov, Pavel Paclík, Robert P. W...
BIOCOMP
2006
13 years 9 months ago
Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
RECOMB
2009
Springer
14 years 8 months ago
Evaluating Between-Pathway Models with Expression Data
Abstract. Between-Pathway Models (BPMs) are network motifs consisting of pairs of putative redundant pathways. In this paper, we show how adding another source of high-throughput d...
Benjamin J. Hescott, Mark D. M. Leiserson, Lenore ...
BIBE
2007
IEEE
120views Bioinformatics» more  BIBE 2007»
13 years 12 months ago
Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier
Recent research has demonstrated the utility of using supervised classification systems for automatic identification of low quality microarray data. However, this approach requires...
Brian E. Howard, Beate Sick, Imara Perera, Yang Ju...
BIBM
2007
IEEE
171views Bioinformatics» more  BIBM 2007»
14 years 2 months ago
GenMiner: Mining Informative Association Rules from Genomic Data
GENMINER is a smart adaptation of closed itemsets based association rules extraction to genomic data. It takes advantage of the novel NORDI discretization method and of the CLOSE ...
Ricardo Martínez, Claude Pasquier, Nicolas ...